Biology: Bioinformatics: Online Services: Page 2

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	Home: Biology: Bioinformatics: Online Services: Page 2 CATEGORIES:   Ecological Databases (0)   Gene Expression and Regulation (6)   Genome Databases (7)   Homology Detection (11)   Molecular Biology Tools (3)   Phylogenetic Analysis (8)   Protein Analysis (22) LINKS:   Pages: [<<] 1 2 Scansite http://scansite.mit.edu/ Scansite searches for motifs within proteins that are likely to be phosphorylated by specific protein kinases or bind to domains such as SH2 domains, 14-3-3 domains or PDZ domains. JustBio: Online Tool Set http://www.justbio.com A Suite of Online tools for analysis of DNA/RNA, Proteins, and Arrays. Verbumculus Genetic Sequence Analyzer http://www.cs.ucr.edu/~stelo/Verbumculus/ An interesting tool to discover and visualize over- or under-represented words in genetic sequences. Requires Java support in browser. Also available as a downloadable program. IBM Bioinformatics Group - Tools & Content http://cbcsrv.watson.ibm.com/Tspd.html Several genomics and proteomics tools, including multiple alignments, gene expression analysis, tandem repeat and motif discovery. ReadSeq http://bimas.dcrt.nih.gov/molbio/readseq/ Convert various aminoacid and nucleotide sequence data formats including FASTA, GenBank, Phylip and others. GenomeSURF http://surf.gi.k.u-tokyo.ac.jp Colorful visualization of Sequence Frequency. Includes Human and Mouse Genomic Sequences. Evaluate uniqueness of graphically. FIE (5' end Information Extraction) http://sdmc.lit.org.sg/FIE/ Gene sequence extraction of regions around the 5'-end (promoter) and/or the translation initiation site (TIS) of a gene. YMF - DNA Motif Finding Program http://abstract.cs.washington.edu/~saurabh/YMFWeb/YMFInput.pl Finds novel transcription factor binding sites by searching for over-represented (most significant motifs) motifs in DNA sequences. Web Services at Institute of Microbial Technology, Chandigarh, India http://imtech.res.in/raghava/www.html Protein structure prediction (Protein Structural Classes, Secondary Structure Prediction), immunological methods (ProPred), genomics & proteomics (Genome Wise Sequence Similarity Search, Spectral Repeat Finder, 2D Gel Comparison, protein coding gene by Fast Fourier Transform), and biological databases. CAP Sequence Assembler http://bio.ifom-firc.it/ASSEMBLY/assemble.html DNA sequence assembly and contig formation. TRANSFAC-The Transcription Factor Database http://www.gene-regulation.com/pub/databases.html#transfac Very thorough compilation of transcriptional regulatory protein factors & their cognate gene promoter elements along with DNA sequence search & analysis programs - from GBF, Braunschweig, Germany. BIOBASE http://www.gene-regulation.com/ The focus of the GBF project "Molecular Bioinformatics of Gene Regulation" are regulatory genomic signals and regions that govern transcriptional control based on TRANSFAC - The Transcription Factor Database. It compiles data about gene regulatory DNA sequences and protein factors binding to and acting through them. ProteinLounge http://www.proteinlounge.com Bioinformatics portal which integrates protein information and many databases and research tools useful for researchers and students. Subscription based service. Carbohydrate-Active Enzymes (CAZy) database http://afmb.cnrs-mrs.fr/CAZY/ Describes the families of structurally-related catalytic and carbohydrate-binding functional domains of enzymes that degrade, modify, or create glycosidic bonds. Kangaroo http://www.blueprint.org/products/kangaroo/kangaroo_search.html Search for motifs and paterns within amino acid and nucleotide databases General Repository for Interaction Datasets (GRID) http://biodata.mshri.on.ca/grid/servlet/Index The GRID is a database of genetic and physical interactions. It contains interaction data from many sources, including several genome/proteome-wide studies, the MIPS database, and BIND MedMiner http://discover.nci.nih.gov/textmining/main.jsp An Internet biomedical data-mining tool for organizing search information gathered from textual or genetic databases - from the NIH National Cancer Inst. Melanie II 2-D Analysis Software http://www.expasy.org/melanie/ Powerful, state-of-the-art, 2-D analysis software package with user-friendly interface from the Swiss Institute of Bioinformatics (SIB).   Pages: [<<] 1 2

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