Biology: Bioinformatics: Software: Page 2

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	Home: Biology: Bioinformatics: Software: Page 2 CATEGORIES:   Software Development (15) LINKS:   Pages: [<<] 1 2 Software for Statistical Folding and Rational Design of Nucleic Acids http://sfold.wadsworth.org/index.pl Sfold predicts probable RNA secondary structures, assesses target accessibility, and provides tools for the rational design of RNA-targeting nucleic acids. The web server version is free for academic use. Gints http://gints.free.Fr Object-oriented regulation network simulator written in Java. Includes downloadable software and documentation. The site is in French and English. BSML - Bioinformation Sequence Markup Language http://www.bsml.org/ Extensible language specification and container for bioinformatic data. AnnHyb - Nucleotidic Sequence Manager http://bioinformatics.org/annhyb/ Free software for working with and managing nucleotide sequences in multiple formats. Many features including sequence annotation, restriction analysis, pattern searching, retrieval from servers. Released under GNU Public Licence. LucID Professional http://www.lucidcentral.com/ Software for creating interactive keys for biology, taxonomy, medicine, and agriculture. Sight http://bioinformatics.org/jSight/ Extendable parallel system for automatic genome analysis. Software for analysing all potential genes in a defined genome region. Given two marker names, can output reports of genomic features between them. Features for converting between naming systems, sequence retrieval, E-PCR, gene prediction, similarity search, protein pattern search, and report formatting. Written in Java. EMBOSS http://www.rfcgr.mrc.ac.uk/Software/EMBOSS/ The European Molecular Biology Open Software Suite. An open source project started by the EMBnet community in order to replace proprieatry systems like GCG. Array Genetics http://www.arraygenetics.com/product_overview.php3 Bioinformatics programs, including MendelBase. Bio Informatic Bacterial Identification http://pbil.univ-lyon1.fr/bibi/query.php Bibliographic site for management and alignment of bacteria and fungi sequences. AbOrygen : Intuitive bioinformatics http://www.aborygen.com AbOrygen develops the next generation of bioinformatics software with powerful new features that simplify and improve the research work of life scientists worldwide. ARCiB -- Accessible Retired Computers in Biology http://arcib.dowling.edu/ NSF supported project to make old computers accessible to new software in bioinformatics. Provides transitional and supplemental support, especially in structual biology, for software packages on various platforms. limmaGUI http://bioinf.wehi.edu.au/limmaGUI/index.html A graphical user interface for linear modelling of cDNA and oligonucleotide microarray data to identify differentially expressed genes. Gene Expression Data Analysis web application http://bioinformatics.upmc.edu/GE2/GEDA.html Normalization tests for differentially expressed genes, clustering, bootstrapping, leave-one-out validation, cross-fold validation, and links to external genomic databases. JAligner http://jaligner.sourceforge.net/ Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment. Logical Depth http://logicaldepth.com/ Accelerated sequence analysis tools for HMMsearch and Smith-Waterman.   Pages: [<<] 1 2

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